STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_1723Sugar-phosphate dehydrogenase; Similar to GI|1934634 (percent identity: 55 %/query alignment coverage: 89.2 %/subject alignment coverage: 102.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 90. (362 aa)    
Predicted Functional Partners:
XF_2267
Glycerol uptake facilitator protein; Similar to SP|P11244 (percent identity: 39 %/query alignment coverage: 94.2 %/subject alignment coverage: 92.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 
 0.467
XF_1722
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the LysR transcriptional regulatory family.
       0.463
XF_1721
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.460
XF_1724
Sugar-phosphate dehydrogenase; Similar to GI|1934634 (percent identity: 55 %/query alignment coverage: 98.2 %/subject alignment coverage: 102.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    
0.434
XF_1729
Phenylacetaldehyde dehydrogenase; Similar to GI|6459673 (percent identity: 61 %/query alignment coverage: 97.9 %/subject alignment coverage: 87.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    
0.409
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.