STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_1782Conserved hypothetical protein; Similar to GI|3818611 (percent identity: 30 %/query alignment coverage: 95.2 %/subject alignment coverage: 91.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (186 aa)    
Predicted Functional Partners:
XF_1781
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.950
XF_1784
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.941
XF_1780
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.881
XF_1785
Chromosome partitioning related protein; Similar to SP|P37522 (percent identity: 27 %/query alignment coverage: 91.1 %/subject alignment coverage: 104.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.872
XF_1778
Single-stranded DNA binding protein; Similar to GI|1490779 (percent identity: 25 %/query alignment coverage: 103.3 %/subject alignment coverage: 68.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.859
XF_1786
Phage-related protein; Similar to GI|4106643 (percent identity: 42 %/query alignment coverage: 78.1 %/subject alignment coverage: 93.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.858
XF_1753
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.777
XF_1761
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 90.
  
     0.774
XF_1718
Phage-related integrase; Similar to GI|3059142 (percent identity: 91 %/query alignment coverage: 93.9 %/subject alignment coverage: 93.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the 'phage' integrase family.
  
     0.763
XF_1776
DNA topoisomerase III; Similar to GI|6513858 (percent identity: 48 %/query alignment coverage: 95.2 %/subject alignment coverage: 88.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -273.
  
     0.761
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.