STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_1798Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (343 aa)    
Predicted Functional Partners:
XF_1799
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
 
 
 0.994
XF_1797
Porphyrin biosynthesis protein; Similar to SP|P09128 (percent identity: 20 %/query alignment coverage: 92.5 %/subject alignment coverage: 90.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.968
cysG
Siroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.
     
 0.908
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
     
 0.903
XF_0152
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.769
XF_0103
Membrane protein; Similar to GI|1549377 (percent identity: 25 %/query alignment coverage: 84.0 %/subject alignment coverage: 79.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.757
XF_0383
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.754
XF_1814
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.752
XF_1979
Transmembrane protein; Similar to GI|4079829 (percent identity: 28 %/query alignment coverage: 92.0 %/subject alignment coverage: 104.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.751
XF_1271
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the UPF0250 family.
  
     0.750
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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