Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_1850Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (162 aa)    
Predicted Functional Partners:
XF_0536
Transposase OrfB; Similar to GI|6176524 (percent identity: 35 %/query alignment coverage: 84.4 %/subject alignment coverage: 78.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -324.
  
     0.746
XF_0325
Transposase OrfA; Similar to GI|6176523 (percent identity: 64 %/query alignment coverage: 64.4 %/subject alignment coverage: 30.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.580
XF_0535
Transposase OrfA; Similar to GI|6176523 (percent identity: 64 %/query alignment coverage: 64.4 %/subject alignment coverage: 30.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.580
XF_1849
Two-component system, sensor protein; Similar to GI|310876 (percent identity: 37 %/query alignment coverage: 78.3 %/subject alignment coverage: 76.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
     
 0.537
XF_1851
Serine protease; Similar to SP|P09489 (percent identity: 25 %/query alignment coverage: 99.0 %/subject alignment coverage: 94.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.493
ntrC
Two-component system, regulatory protein; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.
     
 0.474
XF_1706
Phage-related tail fiber protein; Similar to SP|P03744 (percent identity: 25 %/query alignment coverage: 61.0 %/subject alignment coverage: 23.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.424
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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