STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_1887Hypothetical protein; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides. (716 aa)    
Predicted Functional Partners:
XF_2260
Alanyl dipeptidyl peptidase; Similar to GI|5305698 (percent identity: 30 %/query alignment coverage: 101.1 %/subject alignment coverage: 98.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.663
XF_1886
Phosphoglycerate mutase; Similar to GI|2984221 (percent identity: 32 %/query alignment coverage: 101.9 %/subject alignment coverage: 102.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the phosphoglycerate mutase family.
 
     0.635
XF_0339
Conserved hypothetical protein; Similar to SP|P06129 (percent identity: 35 %/query alignment coverage: 19.4 %/subject alignment coverage: 29.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.514
XF_2706
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.447
XF_1885
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.418
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.