Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
XF_1298 | XF_1889 | XF_1298 | XF_1889 | Electron transfer flavoprotein ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone. | ferredoxin-NADP reductase; Similar to SP|Q44532 (percent identity: 59 %/query alignment coverage: 97.3 %/subject alignment coverage: 97.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. | 0.487 |
XF_1472 | XF_1889 | XF_1472 | XF_1889 | Benzene 1,2-dioxygenase, ferredoxin protein; Similar to SP|Q07947 (percent identity: 37 %/query alignment coverage: 88.1 %/subject alignment coverage: 89.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. | ferredoxin-NADP reductase; Similar to SP|Q44532 (percent identity: 59 %/query alignment coverage: 97.3 %/subject alignment coverage: 97.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. | 0.906 |
XF_1889 | XF_1298 | XF_1889 | XF_1298 | ferredoxin-NADP reductase; Similar to SP|Q44532 (percent identity: 59 %/query alignment coverage: 97.3 %/subject alignment coverage: 97.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. | Electron transfer flavoprotein ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone. | 0.487 |
XF_1889 | XF_1472 | XF_1889 | XF_1472 | ferredoxin-NADP reductase; Similar to SP|Q44532 (percent identity: 59 %/query alignment coverage: 97.3 %/subject alignment coverage: 97.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. | Benzene 1,2-dioxygenase, ferredoxin protein; Similar to SP|Q07947 (percent identity: 37 %/query alignment coverage: 88.1 %/subject alignment coverage: 89.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. | 0.906 |
XF_1889 | thiC | XF_1889 | XF_1888 | ferredoxin-NADP reductase; Similar to SP|Q44532 (percent identity: 59 %/query alignment coverage: 97.3 %/subject alignment coverage: 97.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. | Thiamine biosynthesis protein; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. | 0.491 |
thiC | XF_1889 | XF_1888 | XF_1889 | Thiamine biosynthesis protein; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. | ferredoxin-NADP reductase; Similar to SP|Q44532 (percent identity: 59 %/query alignment coverage: 97.3 %/subject alignment coverage: 97.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. | 0.491 |