STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_1953Pilus biogenesis protein; Similar to SP|P42257 (percent identity: 46 %/query alignment coverage: 97.4 %/subject alignment coverage: 99.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (693 aa)    
Predicted Functional Partners:
XF_1952
Chemotaxis-related protein kinase; Similar to GI|3241969 (percent identity: 42 %/query alignment coverage: 46.3 %/subject alignment coverage: 49.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 0.999
XF_1954
Pilus biogenesis protein; Similar to SP|P43502 (percent identity: 33 %/query alignment coverage: 97.7 %/subject alignment coverage: 96.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 0.999
XF_1955
Pilus protein; Similar to SP|P46384 (percent identity: 82 %/query alignment coverage: 82.1 %/subject alignment coverage: 88.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 0.996
XF_1951
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -42.
  
 0.988
XF_1950
Conserved hypothetical protein; Similar to GI|3241971 (percent identity: 29 %/query alignment coverage: 92.3 %/subject alignment coverage: 85.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.982
XF_0450
Two-component system, regulatory protein; Similar to SP|P43501 (percent identity: 50 %/query alignment coverage: 90.9 %/subject alignment coverage: 99.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -12.
 
 0.970
XF_0397
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.933
XF_2624
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.881
XF_2693
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.736
XF_1957
TonB protein; Similar to GI|3978235 (percent identity: 26 %/query alignment coverage: 67.6 %/subject alignment coverage: 78.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.708
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.