STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_1965Haloalkane dehalogenase; Similar to GI|3114657 (percent identity: 30 %/query alignment coverage: 99.3 %/subject alignment coverage: 102.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (301 aa)    
Predicted Functional Partners:
XF_2276
Peptide synthase; Similar to GI|2808752 (percent identity: 26 %/query alignment coverage: 100.0 %/subject alignment coverage: 105.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 0.990
XF_1825
NAD(P)H steroid dehydrogenase; Similar to GI|5052206 (percent identity: 35 %/query alignment coverage: 100.9 %/subject alignment coverage: 92.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.833
XF_1970
3-oxoacyl-[ACP] synthase III; Similar to GI|3861300 (percent identity: 24 %/query alignment coverage: 88.2 %/subject alignment coverage: 94.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.828
XF_1966
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
XF_1967
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
XF_1968
Methyltransferase; Similar to SP|P25238 (percent identity: 33 %/query alignment coverage: 63.5 %/subject alignment coverage: 81.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
XF_1969
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.556
XF_1640
Ankyrin-like protein; Similar to SP|Q01485 (percent identity: 26 %/query alignment coverage: 81.1 %/subject alignment coverage: 46.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 0.461
apaH
Diadenosine tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
  0.427
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.