STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_1966Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (840 aa)    
Predicted Functional Partners:
XF_0882
ATP-dependent helicase; Similar to SP|P76257 (percent identity: 43 %/query alignment coverage: 89.3 %/subject alignment coverage: 99.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
 0.989
rpoA
RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.971
rpoZ
RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits (By similarity).
    
  0.969
rpoB
RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.968
XF_1968
Methyltransferase; Similar to SP|P25238 (percent identity: 33 %/query alignment coverage: 63.5 %/subject alignment coverage: 81.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
     0.958
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.957
rpoC
RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.850
XF_1965
Haloalkane dehalogenase; Similar to GI|3114657 (percent identity: 30 %/query alignment coverage: 99.3 %/subject alignment coverage: 102.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
XF_1967
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
XF_1810
Conserved hypothetical protein; Similar to SP|P44956 (percent identity: 53 %/query alignment coverage: 98.2 %/subject alignment coverage: 96.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
  0.660
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.