STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_19703-oxoacyl-[ACP] synthase III; Similar to GI|3861300 (percent identity: 24 %/query alignment coverage: 88.2 %/subject alignment coverage: 94.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (338 aa)    
Predicted Functional Partners:
XF_0670
Malonyl CoA-ACP transacylase; Similar to SP|O85140 (percent identity: 51 %/query alignment coverage: 96.5 %/subject alignment coverage: 99.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.905
XF_2276
Peptide synthase; Similar to GI|2808752 (percent identity: 26 %/query alignment coverage: 100.0 %/subject alignment coverage: 105.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.836
XF_1965
Haloalkane dehalogenase; Similar to GI|3114657 (percent identity: 30 %/query alignment coverage: 99.3 %/subject alignment coverage: 102.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.828
XF_0673
3-oxoacyl-[ACP] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
  
 0.786
XF_1825
NAD(P)H steroid dehydrogenase; Similar to GI|5052206 (percent identity: 35 %/query alignment coverage: 100.9 %/subject alignment coverage: 92.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.784
XF_1639
beta-ketoacyl-[ACP] synthase II; Similar to SP|P39435 (percent identity: 34 %/query alignment coverage: 81.7 %/subject alignment coverage: 78.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
  
 0.716
acpP
ACP; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.703
XF_1971
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.609
fabZ
(3r)-hydroxymyristoyl ACP dehydrase; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.
 
  
 0.601
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
   
    0.496
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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