STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_1971Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (103 aa)    
Predicted Functional Partners:
XF_1508
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.719
XF_0588
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.693
XF_1798
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.691
XF_1979
Transmembrane protein; Similar to GI|4079829 (percent identity: 28 %/query alignment coverage: 92.0 %/subject alignment coverage: 104.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.677
XF_2570
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.676
XF_1525
Conserved hypothetical protein; Similar to SP|P29039 (percent identity: 70 %/query alignment coverage: 91.4 %/subject alignment coverage: 81.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.668
XF_1950
Conserved hypothetical protein; Similar to GI|3241971 (percent identity: 29 %/query alignment coverage: 92.3 %/subject alignment coverage: 85.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.649
XF_1898
TolA protein; Similar to GI|5733836 (percent identity: 21 %/query alignment coverage: 102.6 %/subject alignment coverage: 102.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.639
XF_0403
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.637
XF_0103
Membrane protein; Similar to GI|1549377 (percent identity: 25 %/query alignment coverage: 84.0 %/subject alignment coverage: 79.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.628
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.