STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_1979Transmembrane protein; Similar to GI|4079829 (percent identity: 28 %/query alignment coverage: 92.0 %/subject alignment coverage: 104.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (314 aa)    
Predicted Functional Partners:
XF_1798
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.751
XF_1508
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.733
XF_1971
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.677
XF_0383
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.676
XF_1947
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.676
XF_1898
TolA protein; Similar to GI|5733836 (percent identity: 21 %/query alignment coverage: 102.6 %/subject alignment coverage: 102.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.657
XF_0588
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.644
XF_1109
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 84.
  
     0.638
XF_0553
Conserved hypothetical protein; Similar to SP|P45299 (percent identity: 23 %/query alignment coverage: 105.6 %/subject alignment coverage: 105.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 105.
  
     0.631
XF_1126
Conserved hypothetical protein; Similar to GI|606184 (percent identity: 22 %/query alignment coverage: 40.4 %/subject alignment coverage: 99.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.630
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.