STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_1981Surface protein; Similar to GI|1666683 (percent identity: 24 %/query alignment coverage: 99.3 %/subject alignment coverage: 50.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (1190 aa)    
Predicted Functional Partners:
XF_2539
Fimbrial protein; Similar to GI|1073087 (percent identity: 48 %/query alignment coverage: 100.0 %/subject alignment coverage: 108.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
   
 0.556
XF_1026
Serine protease; Similar to GI|4115629 (percent identity: 27 %/query alignment coverage: 98.7 %/subject alignment coverage: 86.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
   
 0.531
XF_1851
Serine protease; Similar to SP|P09489 (percent identity: 25 %/query alignment coverage: 99.0 %/subject alignment coverage: 94.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
   
 0.422
XF_0267
Serine protease; Similar to GI|4115629 (percent identity: 28 %/query alignment coverage: 99.3 %/subject alignment coverage: 87.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
   
 0.413
XF_0343
Outer membrane protein; Similar to GI|4104020 (percent identity: 31 %/query alignment coverage: 98.7 %/subject alignment coverage: 110.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
   
 0.409
XF_0614
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.408
XF_0081
Outer membrane usher protein precursor; Similar to SP|P30130 (percent identity: 36 %/query alignment coverage: 95.7 %/subject alignment coverage: 98.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
   
 0.407
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.