STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_1995Conserved hypothetical protein; Similar to GI|2314187 (percent identity: 24 %/query alignment coverage: 67.8 %/subject alignment coverage: 66.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (423 aa)    
Predicted Functional Partners:
XF_0105
3-deoxy-D-manno-octulosonic acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.915
XF_1994
Beta 1,4 glucosyltransferase; Similar to SP|P44029 (percent identity: 29 %/query alignment coverage: 88.3 %/subject alignment coverage: 101.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.708
XF_2367
GumD protein; Similar to GI|2120726 (percent identity: 73 %/query alignment coverage: 100.0 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.700
XF_1451
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.685
XF_1993
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.664
lapB
Conserved hypothetical protein; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family.
  
   
 0.626
XF_2365
GumF protein; Similar to GI|2120728 (percent identity: 44 %/query alignment coverage: 92.0 %/subject alignment coverage: 91.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.625
lptC
Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA.
  
   
 0.605
XF_1996
Transcriptional regulator (PbsX family); Similar to SP|P03035 (percent identity: 35 %/query alignment coverage: 54.0 %/subject alignment coverage: 31.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -6.
  
    0.588
XF_0259
Phosphomannose isomerase-GDP-mannose pyrophosphorylase; Similar to SP|P29956 (percent identity: 84 %/query alignment coverage: 96.9 %/subject alignment coverage: 100.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.579
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.