STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_1996Transcriptional regulator (PbsX family); Similar to SP|P03035 (percent identity: 35 %/query alignment coverage: 54.0 %/subject alignment coverage: 31.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -6. (126 aa)    
Predicted Functional Partners:
XF_1798
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.743
XF_1997
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.666
XF_0383
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.642
XF_0152
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.618
XF_1451
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.604
XF_1508
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.600
XF_1995
Conserved hypothetical protein; Similar to GI|2314187 (percent identity: 24 %/query alignment coverage: 67.8 %/subject alignment coverage: 66.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.588
XF_2365
GumF protein; Similar to GI|2120728 (percent identity: 44 %/query alignment coverage: 92.0 %/subject alignment coverage: 91.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.578
XF_1837
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 69.
  
     0.571
XF_0561
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.555
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.