STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_1998DNA-binding protein; Similar to SP|P44966 (percent identity: 58 %/query alignment coverage: 80.0 %/subject alignment coverage: 72.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the transcriptional regulatory Fis family. (90 aa)    
Predicted Functional Partners:
XF_2624
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
    
 
 0.757
dusA
Conserved hypothetical protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily.
  
  
 0.756
XF_0401
Conserved hypothetical protein; Similar to SP|P45365 (percent identity: 26 %/query alignment coverage: 99.8 %/subject alignment coverage: 81.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
    
 
 0.755
XF_1997
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.709
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
   
    0.539
XF_0911
Stringent starvation protein A; Similar to SP|P05838 (percent identity: 46 %/query alignment coverage: 98.6 %/subject alignment coverage: 98.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the GST superfamily.
  
   
 0.516
XF_0590
Conserved hypothetical protein; Similar to SP|P76570 (percent identity: 36 %/query alignment coverage: 97.4 %/subject alignment coverage: 91.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the DnaA family. HdA subfamily.
  
   
 0.492
XF_1996
Transcriptional regulator (PbsX family); Similar to SP|P03035 (percent identity: 35 %/query alignment coverage: 54.0 %/subject alignment coverage: 31.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -6.
       0.440
dnaA
Chromosomal replication initiator; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids (By similarity).
  
   
 0.418
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
   0.414
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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