STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_2000Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (216 aa)    
Predicted Functional Partners:
XF_1475
ABC transporter ATP-binding protein; Similar to SP|P77499 (percent identity: 63 %/query alignment coverage: 87.8 %/subject alignment coverage: 98.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -96.
 
  
 0.782
XF_1476
ABC transporter membrane protein; Similar to SP|Q55790 (percent identity: 69 %/query alignment coverage: 97.1 %/subject alignment coverage: 98.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.716
XF_1474
ABC transporter membrane protein; Similar to SP|P77689 (percent identity: 33 %/query alignment coverage: 91.0 %/subject alignment coverage: 90.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.690
XF_2001
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.616
csd
Aminotransferase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
  
 0.602
XF_1999
Branched-chain amino acid aminotransferase; Similar to SP|Q10399 (percent identity: 55 %/query alignment coverage: 100.3 %/subject alignment coverage: 98.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.568
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.