STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_2008Conserved hypothetical protein; Similar to GI|4981730 (percent identity: 39 %/query alignment coverage: 68.7 %/subject alignment coverage: 83.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (217 aa)    
Predicted Functional Partners:
XF_0188
Conserved hypothetical protein; Similar to SP|P45799 (percent identity: 46 %/query alignment coverage: 95.7 %/subject alignment coverage: 95.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 75.
   
 
 0.904
prs
Phosphoribosyl pyrophosphate synthetase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
    
 0.902
XF_0260
Phosphoglucomutase/phosphomannomutase; Similar to SP|P29955 (percent identity: 84 %/query alignment coverage: 89.6 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
     
  0.900
nnrE
Conserved hypothetical protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair o [...]
  
 0.736
XF_1796
Similar to SP|P06709 (percent identity: 40 %/query alignment coverage: 95.9 %/subject alignment coverage: 94.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
    0.583
XF_2007
Conserved hypothetical protein; Similar to SP|P24250 (percent identity: 35 %/query alignment coverage: 87.4 %/subject alignment coverage: 91.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.563
XF_1261
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.524
XF_0816
Zinc protease; Similar to GI|2661690 (percent identity: 40 %/query alignment coverage: 40.3 %/subject alignment coverage: 88.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
   0.469
rnr
VacB protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
   
 0.407
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.