STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_2010Conserved hypothetical protein; Similar to GI|140683 (percent identity: 36 %/query alignment coverage: 91.4 %/subject alignment coverage: 87.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the UPF0149 family. (185 aa)    
Predicted Functional Partners:
XF_2009
Similar to GI|1653657 (percent identity: 46 %/query alignment coverage: 98.9 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -75.
 
     0.835
XF_1178
Conserved hypothetical protein; Similar to SP|Q46868 (percent identity: 39 %/query alignment coverage: 77.4 %/subject alignment coverage: 70.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.733
zipA
Cell division protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.
  
     0.730
XF_2012
Conserved hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.
 
  
 0.679
XF_1832
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.630
XF_2011
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.608
hflD
Conserved hypothetical protein; Similar to SP|P25746 (percent identity: 31 %/query alignment coverage: 97.1 %/subject alignment coverage: 93.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.584
rnt
Ribonuclease T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis.
  
     0.576
lptA
Conserved hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm.
  
     0.548
XF_1424
Chitinase; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process.
  
    0.501
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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