STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_2011Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (73 aa)    
Predicted Functional Partners:
XF_2012
Conserved hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.
 
    0.951
XF_2010
Conserved hypothetical protein; Similar to GI|140683 (percent identity: 36 %/query alignment coverage: 91.4 %/subject alignment coverage: 87.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the UPF0149 family.
 
     0.608
XF_1957
TonB protein; Similar to GI|3978235 (percent identity: 26 %/query alignment coverage: 67.6 %/subject alignment coverage: 78.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.588
XF_1832
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.585
XF_1608
Conserved hypothetical protein; Similar to SP|P51024 (percent identity: 27 %/query alignment coverage: 78.7 %/subject alignment coverage: 92.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.567
XF_1508
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.566
lptE
Hypothetical protein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
  
     0.542
XF_2546
Two-component system, sensor protein; Similar to SP|P33639 (percent identity: 37 %/query alignment coverage: 82.8 %/subject alignment coverage: 98.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.538
XF_2005
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.535
XF_2009
Similar to GI|1653657 (percent identity: 46 %/query alignment coverage: 98.9 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -75.
       0.520
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.