STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_2013Conserved hypothetical protein; Similar to SP|P44905 (percent identity: 35 %/query alignment coverage: 88.2 %/subject alignment coverage: 95.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. (203 aa)    
Predicted Functional Partners:
folD
Bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
 
  
 0.945
purN
5'-phosphoribosylglycinamide transformylase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
  
 
 0.934
XF_2014
Conserved hypothetical protein; Similar to GI|6458261 (percent identity: 53 %/query alignment coverage: 98.6 %/subject alignment coverage: 89.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.814
rpiA
Ribose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
       0.814
pheT
phenylalanyl-tRNA sinthetase beta chain; Similar to SP|P07395 (percent identity: 42 %/query alignment coverage: 100.4 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.469
XF_0649
Conserved hypothetical protein; Similar to GI|4981632 (percent identity: 32 %/query alignment coverage: 89.3 %/subject alignment coverage: 90.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.407
XF_1054
Conserved hypothetical protein; Similar to GI|4981632 (percent identity: 28 %/query alignment coverage: 97.4 %/subject alignment coverage: 101.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.407
XF_2186
Conserved hypothetical protein; Similar to GI|3323304 (percent identity: 34 %/query alignment coverage: 86.9 %/subject alignment coverage: 86.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.407
XF_2016
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.405
gcvP
Glycine decarboxylase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
  
 0.401
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.