STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_2084Component of multidrug efflux system; Similar to GI|1707644 (percent identity: 28 %/query alignment coverage: 97.3 %/subject alignment coverage: 86.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 72; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (368 aa)    
Predicted Functional Partners:
XF_2083
Cation efflux system protein; Similar to SP|P94177 (percent identity: 24 %/query alignment coverage: 103.4 %/subject alignment coverage: 99.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.969
XF_2085
Transcriptional regulator (AcrR family); Similar to GI|5441765 (percent identity: 23 %/query alignment coverage: 95.1 %/subject alignment coverage: 77.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.893
XF_0243
Acriflavin resistance protein; Similar to GI|2632985 (percent identity: 23 %/query alignment coverage: 102.7 %/subject alignment coverage: 99.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.860
XF_2082
Oxidoreductase; Similar to GI|6742158 (percent identity: 31 %/query alignment coverage: 73.5 %/subject alignment coverage: 83.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.834
XF_2586
Outer membrane export factor; Similar to SP|P02930 (percent identity: 33 %/query alignment coverage: 98.0 %/subject alignment coverage: 89.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.731
XF_2386
Acriflavin resistance protein; Similar to SP|P76398 (percent identity: 42 %/query alignment coverage: 98.5 %/subject alignment coverage: 97.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
   0.595
XF_2385
Acriflavin resistance protein D; Similar to SP|P76398 (percent identity: 50 %/query alignment coverage: 98.9 %/subject alignment coverage: 102.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -117; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
   0.590
XF_2094
Multidrug-efflux transporter; Similar to SP|P24181 (percent identity: 50 %/query alignment coverage: 98.4 %/subject alignment coverage: 100.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
   0.574
lolD
ABC transporter ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
 
 0.459
XF_2384
Membrane fusion protein precursor; Similar to GI|1736780 (percent identity: 37 %/query alignment coverage: 94.6 %/subject alignment coverage: 85.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.442
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.