Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_2091Conserved hypothetical protein; Similar to GI|2791516 (percent identity: 38 %/query alignment coverage: 95.4 %/subject alignment coverage: 97.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (1664 aa)    
Predicted Functional Partners:
XF_2710
Glutamate synthase, alpha subunit; Similar to SP|P09831 (percent identity: 53 %/query alignment coverage: 99.7 %/subject alignment coverage: 97.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -117.
     
 0.945
XF_1842
Glutamine synthetase; Similar to SP|P06711 (percent identity: 64 %/query alignment coverage: 92.9 %/subject alignment coverage: 99.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
     
 0.941
XF_2396
Aminotransferase; Similar to SP|O33267 (percent identity: 45 %/query alignment coverage: 91.3 %/subject alignment coverage: 90.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.922
XF_2709
Glutamate synthase, beta subunit; Similar to SP|P09832 (percent identity: 55 %/query alignment coverage: 97.4 %/subject alignment coverage: 101.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
     
 0.913
argB
Acetylglutamate kinase; Similar to GI|2984288 (percent identity: 30 %/query alignment coverage: 61.2 %/subject alignment coverage: 98.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
     
  0.900
XF_1535
Citrate synthase; Similar to SP|P14165 (percent identity: 61 %/query alignment coverage: 99.1 %/subject alignment coverage: 99.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the citrate synthase family.
     
 0.861
XF_1550
Oxoglutarate dehydrogenase; Similar to SP|Q59106 (percent identity: 54 %/query alignment coverage: 97.6 %/subject alignment coverage: 99.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
 
 0.849
gcvT
Glycine cleavage T protein; The glycine cleavage system catalyzes the degradation of glycine.
     
 0.823
gcvP
Glycine decarboxylase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.823
XF_0868
Dihydrolipoamide dehydrogenase; Similar to GI|1073212 (percent identity: 57 %/query alignment coverage: 100.2 %/subject alignment coverage: 101.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.818
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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