STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_2120Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (383 aa)    
Predicted Functional Partners:
XF_0510
Conserved hypothetical protein; Similar to GI|6723246 (percent identity: 25 %/query alignment coverage: 88.5 %/subject alignment coverage: 97.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.783
XF_0713
Phage-related portal protein; Similar to SP|P36272 (percent identity: 25 %/query alignment coverage: 96.6 %/subject alignment coverage: 97.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.783
XF_2498
Phage-related portal protein; Similar to SP|P36272 (percent identity: 25 %/query alignment coverage: 96.6 %/subject alignment coverage: 97.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.783
XF_2121
Virulence-associated protein E; Similar to GI|563258 (percent identity: 32 %/query alignment coverage: 80.6 %/subject alignment coverage: 92.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
XF_2122
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -9.
       0.773
XF_2115
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.753
XF_0714
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.731
XF_2497
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.731
XF_0518
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.724
XF_0521
Conserved hypothetical protein; Similar to GI|6863126 (percent identity: 21 %/query alignment coverage: 90.4 %/subject alignment coverage: 93.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.704
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.