STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_2134Ferric enterobactin receptor; Similar to GI|538279 (percent identity: 22 %/query alignment coverage: 85.9 %/subject alignment coverage: 92.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (793 aa)    
Predicted Functional Partners:
XF_2713
Conserved hypothetical protein; Similar to GI|3661500 (percent identity: 26 %/query alignment coverage: 29.7 %/subject alignment coverage: 38.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.716
XF_0820
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.705
XF_2706
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.697
XF_1036
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.583
XF_0384
Outer membrane hemin receptor; Similar to GI|3044098 (percent identity: 22 %/query alignment coverage: 88.3 %/subject alignment coverage: 78.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.567
XF_2327
TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.560
XF_0222
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 81.
  
     0.538
XF_0009
TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.528
XF_1496
TonB-dependent receptor for iron transport; Similar to SP|P76115 (percent identity: 23 %/query alignment coverage: 77.5 %/subject alignment coverage: 75.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.517
XF_2133
ABC transporter ATP-binding protein; Similar to SP|P45535 (percent identity: 45 %/query alignment coverage: 99.7 %/subject alignment coverage: 100.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.517
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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