STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_2156Protein phosphatase; Similar to GI|2337805 (percent identity: 35 %/query alignment coverage: 98.3 %/subject alignment coverage: 92.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (240 aa)    
Predicted Functional Partners:
XF_0868
Dihydrolipoamide dehydrogenase; Similar to GI|1073212 (percent identity: 57 %/query alignment coverage: 100.2 %/subject alignment coverage: 101.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 0.946
XF_1640
Ankyrin-like protein; Similar to SP|Q01485 (percent identity: 26 %/query alignment coverage: 81.1 %/subject alignment coverage: 46.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
 0.796
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.790
XF_1212
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.781
XF_2267
Glycerol uptake facilitator protein; Similar to SP|P11244 (percent identity: 39 %/query alignment coverage: 94.2 %/subject alignment coverage: 92.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
   0.777
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
   0.772
gcvT
Glycine cleavage T protein; The glycine cleavage system catalyzes the degradation of glycine.
   
  0.742
XF_0278
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
 0.713
kdkA
Conserved hypothetical protein; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
   
 0.713
XF_0451
Conserved hypothetical protein; Similar to SP|P26646 (percent identity: 40 %/query alignment coverage: 88.7 %/subject alignment coverage: 99.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
    
   0.686
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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