STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_2196Hemagglutinin-like secreted protein; Similar to GI|2623258 (percent identity: 35 %/query alignment coverage: 27.4 %/subject alignment coverage: 41.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (3442 aa)    
Predicted Functional Partners:
XF_2550
Outer membrane hemolysin activator protein; Similar to GI|1772622 (percent identity: 26 %/query alignment coverage: 93.0 %/subject alignment coverage: 99.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.811
XF_2195
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
XF_2197
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 6.
       0.558
XF_0077
Fimbrial adhesin precursor; Similar to SP|P21648 (percent identity: 30 %/query alignment coverage: 89.9 %/subject alignment coverage: 99.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.533
XF_0083
Fimbrial subunit precursor; Similar to SP|P11312 (percent identity: 42 %/query alignment coverage: 99.5 %/subject alignment coverage: 101.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.511
XF_0078
Fimbrial adhesin precursor; Similar to SP|P21648 (percent identity: 32 %/query alignment coverage: 88.1 %/subject alignment coverage: 97.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.503
XF_0081
Outer membrane usher protein precursor; Similar to SP|P30130 (percent identity: 36 %/query alignment coverage: 95.7 %/subject alignment coverage: 98.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.481
XF_0080
Fimbrial adhesin precursor; Similar to SP|P04128 (percent identity: 29 %/query alignment coverage: 52.2 %/subject alignment coverage: 91.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 183.
  
    0.470
XF_0082
Chaperone protein precursor; Similar to SP|P33128 (percent identity: 40 %/query alignment coverage: 93.2 %/subject alignment coverage: 100.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.464
XF_0630
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.440
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.