STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_2227Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. (155 aa)    
Predicted Functional Partners:
XF_2228
Transcriptional regulator; Similar to GI|5817606 (percent identity: 45 %/query alignment coverage: 100.0 %/subject alignment coverage: 99.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the UPF0301 (AlgH) family.
  
  
 0.944
pyrB
Aspartate carbamoyltransferase; Similar to SP|Q59653 (percent identity: 52 %/query alignment coverage: 96.0 %/subject alignment coverage: 92.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 51.
  
    0.874
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
  
 0.608
XF_2229
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.543
miaA
tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
  
    0.487
gshB
Glutathione synthetase; Similar to SP|P04425 (percent identity: 53 %/query alignment coverage: 97.1 %/subject alignment coverage: 96.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.458
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
    0.430
XF_1078
DNA uptake protein; Similar to SP|P51973 (percent identity: 35 %/query alignment coverage: 74.9 %/subject alignment coverage: 90.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.424
XF_1110
Single-stranded DNA exonuclease; Similar to SP|P21893 (percent identity: 45 %/query alignment coverage: 96.7 %/subject alignment coverage: 97.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -12.
 
   
 0.407
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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