STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
katGCatalase/peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. (781 aa)    
Predicted Functional Partners:
XF_0036
Aromatic-amino-acid aminotranferase; Similar to GI|5565921 (percent identity: 55 %/query alignment coverage: 99.5 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
     
 0.904
hisC
Histidinol-phosphate aminotransferase; Similar to SP|P06986 (percent identity: 42 %/query alignment coverage: 97.8 %/subject alignment coverage: 100.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
 0.903
XF_2325
P-protein; Similar to GI|3153199 (percent identity: 75 %/query alignment coverage: 101.9 %/subject alignment coverage: 95.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
     
  0.800
XF_0961
Bacterioferritin comigratory protein; Similar to GI|1651777 (percent identity: 51 %/query alignment coverage: 83.6 %/subject alignment coverage: 83.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
      
 0.691
gshB
Glutathione synthetase; Similar to SP|P04425 (percent identity: 53 %/query alignment coverage: 97.1 %/subject alignment coverage: 96.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
      
 0.691
XF_1921
Superoxide dismutase [MN] precursor; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
     
 0.657
XF_2614
Superoxide dismutase (MN); Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
     
 0.657
mntH
Manganese transport protein; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.
      
 0.604
XF_2231
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.491
XF_1827
Organic hydroperoxide resistance protein; Similar to GI|3098342 (percent identity: 70 %/query alignment coverage: 98.6 %/subject alignment coverage: 99.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
      
 0.436
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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