STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_2233DnaJ protein; Similar to SP|Q56237 (percent identity: 41 %/query alignment coverage: 99.3 %/subject alignment coverage: 103.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (293 aa)    
Predicted Functional Partners:
dnaK
DnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 0.989
htpG
Heat shock protein G; Molecular chaperone. Has ATPase activity.
  
 0.934
grpE
Heat shock protein GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP- [...]
 
 
 0.920
groL
60kDa chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
 
 0.814
XF_2234
Low molecular weight heat shock protein; Similar to SP|Q06823 (percent identity: 38 %/query alignment coverage: 67.5 %/subject alignment coverage: 57.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the small heat shock protein (HSP20) family.
  
 
 0.734
XF_0816
Zinc protease; Similar to GI|2661690 (percent identity: 40 %/query alignment coverage: 40.3 %/subject alignment coverage: 88.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
   0.687
rplQ
50S ribosomal protein L17; Similar to GI|4098578 (percent identity: 80 %/query alignment coverage: 100.0 %/subject alignment coverage: 99.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.675
XF_1212
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
 
 0.673
XF_2267
Glycerol uptake facilitator protein; Similar to SP|P11244 (percent identity: 39 %/query alignment coverage: 94.2 %/subject alignment coverage: 92.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 
 0.668
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
 
 
 
 0.666
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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