STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_2240Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (243 aa)    
Predicted Functional Partners:
XF_2239
RNA polymerase sigma-H factor; Similar to SP|Q06198 (percent identity: 56 %/query alignment coverage: 90.8 %/subject alignment coverage: 96.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.992
XF_2241
Periplasmic protease; Similar to GI|1184684 (percent identity: 47 %/query alignment coverage: 91.2 %/subject alignment coverage: 98.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -48; Belongs to the peptidase S1C family.
  
 
 0.919
XF_0285
Heat shock protein; Similar to SP|P09376 (percent identity: 43 %/query alignment coverage: 97.3 %/subject alignment coverage: 98.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the peptidase S1C family.
  
 
 0.763
XF_0912
Stringent starvation protein B; Similar to SP|P25663 (percent identity: 42 %/query alignment coverage: 114.4 %/subject alignment coverage: 101.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
    
 
 0.745
XF_1948
Colicin V production protein; Similar to SP|P45108 (percent identity: 31 %/query alignment coverage: 70.0 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.728
XF_0178
Conserved hypothetical protein; Similar to SP|P37796 (percent identity: 33 %/query alignment coverage: 59.5 %/subject alignment coverage: 85.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
    0.568
XF_0996
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -48.
   
    0.533
lepA
GTP binding protein; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
       0.516
XF_2242
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.451
XF_2244
Signal peptidase I; Similar to SP|P00803 (percent identity: 40 %/query alignment coverage: 113.5 %/subject alignment coverage: 93.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the peptidase S26 family.
       0.406
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.