Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_22693-alpha-hydroxysteroid dehydrogenase; Similar to GI|6460829 (percent identity: 34 %/query alignment coverage: 96.5 %/subject alignment coverage: 96.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (255 aa)    
Predicted Functional Partners:
XF_2082
Oxidoreductase; Similar to GI|6742158 (percent identity: 31 %/query alignment coverage: 73.5 %/subject alignment coverage: 83.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 
 0.717
XF_0319
acetoacetyl-CoA reductase; Similar to SP|P14697 (percent identity: 65 %/query alignment coverage: 99.6 %/subject alignment coverage: 99.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.628
XF_1726
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase; Similar to SP|P50197 (percent identity: 39 %/query alignment coverage: 97.3 %/subject alignment coverage: 99.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.628
cyp133B1
Cytochrome P450-like enzyme; Similar to SP|P53554 (percent identity: 37 %/query alignment coverage: 94.3 %/subject alignment coverage: 95.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -108.
  
   0.626
cyp133B2
Cytochrome P-450 hydroxylase; Similar to GI|4753860 (percent identity: 37 %/query alignment coverage: 93.0 %/subject alignment coverage: 90.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
   0.624
XF_0913
Tropinone reductase; Similar to GI|3980406 (percent identity: 43 %/query alignment coverage: 99.2 %/subject alignment coverage: 80.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.579
XF_0173
3-oxoacyl-[ACP] reductase; Similar to GI|6459730 (percent identity: 42 %/query alignment coverage: 96.8 %/subject alignment coverage: 95.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.524
XF_2716
Ketoreductase; Similar to GI|1163927 (percent identity: 29 %/query alignment coverage: 95.9 %/subject alignment coverage: 99.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.448
XF_1141
Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate.
  
     0.404
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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