STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_2270Conserved hypothetical protein; Similar to SP|P39173 (percent identity: 33 %/query alignment coverage: 100.3 %/subject alignment coverage: 98.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the glucose-6-phosphate 1-epimerase family. (288 aa)    
Predicted Functional Partners:
glk
Glucose kinase; Similar to SP|P46880 (percent identity: 41 %/query alignment coverage: 95.3 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the bacterial glucokinase family.
    
  0.904
XF_1460
Glucose kinase; Similar to SP|P21908 (percent identity: 35 %/query alignment coverage: 92.6 %/subject alignment coverage: 96.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the bacterial glucokinase family.
    
  0.904
pgi
Glucose-6-phosphate isomerase; Similar to GI|2996048 (percent identity: 79 %/query alignment coverage: 99.6 %/subject alignment coverage: 89.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
 
 0.903
XF_0260
Phosphoglucomutase/phosphomannomutase; Similar to SP|P29955 (percent identity: 84 %/query alignment coverage: 89.6 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
    
  0.900
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
 
 
  0.836
XF_1061
2-keto-3-deoxy-6-phosphogluconate aldolase; Similar to SP|P10177 (percent identity: 41 %/query alignment coverage: 92.7 %/subject alignment coverage: 95.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
    
 0.822
XF_0826
Fructose-bisphosphate aldolase; Similar to SP|P46256 (percent identity: 52 %/query alignment coverage: 99.4 %/subject alignment coverage: 93.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the class I fructose-bisphosphate aldolase family.
     
 0.804
XF_1936
Transketolase 1; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
     
 0.802
ilvD
Dihydroxy-acid dehydratase; Similar to SP|P44851 (percent identity: 73 %/query alignment coverage: 100.3 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -78; Belongs to the IlvD/Edd family.
 
    0.686
XF_2271
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.448
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.