STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_2279Nucleotide sugar epimerase; Similar to GI|5739472 (percent identity: 51 %/query alignment coverage: 97.7 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (342 aa)    
Predicted Functional Partners:
XF_1606
UDP-glucose dehydrogenase; Similar to GI|1084047 (percent identity: 63 %/query alignment coverage: 102.4 %/subject alignment coverage: 103.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 0.945
XF_0611
dTDP-glucose 4-6-dehydratase; Similar to GI|1653195 (percent identity: 63 %/query alignment coverage: 94.8 %/subject alignment coverage: 95.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -66.
     
 
0.900
XF_2278
Dolichol-phosphate mannosyltransferase; Similar to GI|2258416 (percent identity: 24 %/query alignment coverage: 92.5 %/subject alignment coverage: 96.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.871
XF_2432
UTP-glucose-1-phosphate uridylyltransferase; Similar to GI|2117938 (percent identity: 82 %/query alignment coverage: 99.3 %/subject alignment coverage: 90.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
    
 0.821
XF_2277
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
rpsS
30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.707
rpsC
30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
  0.703
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
  0.695
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
   
  0.681
rplN
50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
   
   0.678
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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