Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_2287TonB protein; Similar to SP|O34261 (percent identity: 29 %/query alignment coverage: 92.6 %/subject alignment coverage: 96.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (231 aa)    
Predicted Functional Partners:
XF_0010
Biopolymer transport ExbB protein; Similar to SP|O34260 (percent identity: 81 %/query alignment coverage: 100.0 %/subject alignment coverage: 100.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.784
XF_1496
TonB-dependent receptor for iron transport; Similar to SP|P76115 (percent identity: 23 %/query alignment coverage: 77.5 %/subject alignment coverage: 75.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.686
XF_0011
Biopolymer transport ExbD1 protein; Similar to SP|O34259 (percent identity: 78 %/query alignment coverage: 100.0 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.642
XF_0012
Biopolymer transport ExbD2 protein; Similar to SP|O34258 (percent identity: 82 %/query alignment coverage: 98.5 %/subject alignment coverage: 98.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.618
XF_1079
Conserved hypothetical protein; Similar to GI|5531413 (percent identity: 46 %/query alignment coverage: 85.5 %/subject alignment coverage: 94.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.612
tolQ
TolQ protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.603
XF_0600
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
    
   0.583
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
       0.556
XF_1080
Conserved hypothetical protein; Similar to GI|5531414 (percent identity: 36 %/query alignment coverage: 90.3 %/subject alignment coverage: 92.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 45.
  
 
 0.550
XF_1036
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   0.519
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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