STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_2288Phage-related integrase; Similar to SP|P03700 (percent identity: 26 %/query alignment coverage: 76.8 %/subject alignment coverage: 76.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the 'phage' integrase family. (353 aa)    
Predicted Functional Partners:
XF_2289
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.763
XF_0730
Phage-related tail protein; Similar to GI|3139112 (percent identity: 21 %/query alignment coverage: 85.8 %/subject alignment coverage: 77.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 36.
  
    0.475
XF_2115
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.467
XF_2290
Phage-related protein; Similar to GI|6118040 (percent identity: 57 %/query alignment coverage: 84.3 %/subject alignment coverage: 26.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.467
XF_2291
Phage-related protein; Similar to GI|6118040 (percent identity: 47 %/query alignment coverage: 69.0 %/subject alignment coverage: 17.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.467
XF_2292
Phage-related protein; Similar to GI|6118039 (percent identity: 50 %/query alignment coverage: 89.1 %/subject alignment coverage: 88.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.465
XF_0526
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.464
XF_2482
Phage-related protein; Similar to GI|4063799 (percent identity: 21 %/query alignment coverage: 77.4 %/subject alignment coverage: 63.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 36.
  
    0.462
XF_1571
Conserved hypothetical protein; Similar to SP|P44183 (percent identity: 30 %/query alignment coverage: 92.9 %/subject alignment coverage: 99.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.417
XF_1676
Conserved hypothetical protein; Similar to SP|P44183 (percent identity: 30 %/query alignment coverage: 92.9 %/subject alignment coverage: 99.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.417
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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