STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_2289Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (98 aa)    
Predicted Functional Partners:
XF_2288
Phage-related integrase; Similar to SP|P03700 (percent identity: 26 %/query alignment coverage: 76.8 %/subject alignment coverage: 76.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the 'phage' integrase family.
       0.765
XF_2290
Phage-related protein; Similar to GI|6118040 (percent identity: 57 %/query alignment coverage: 84.3 %/subject alignment coverage: 26.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.470
XF_2291
Phage-related protein; Similar to GI|6118040 (percent identity: 47 %/query alignment coverage: 69.0 %/subject alignment coverage: 17.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.470
XF_2292
Phage-related protein; Similar to GI|6118039 (percent identity: 50 %/query alignment coverage: 89.1 %/subject alignment coverage: 88.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.470
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.