STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_2298Low molecular weight phosphotyrosine protein phosphatase; Similar to GI|257210 (percent identity: 40 %/query alignment coverage: 89.0 %/subject alignment coverage: 86.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (154 aa)    
Predicted Functional Partners:
kdsB
3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
       0.835
XF_2174
Thioredoxin; Similar to SP|P77395 (percent identity: 31 %/query alignment coverage: 82.5 %/subject alignment coverage: 94.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.635
XF_2698
Thioredoxin; Similar to SP|P00274 (percent identity: 49 %/query alignment coverage: 96.5 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the thioredoxin family.
  
 
 0.635
XF_2367
GumD protein; Similar to GI|2120726 (percent identity: 73 %/query alignment coverage: 100.0 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.558
XF_2370
GumB protein; Similar to GI|2120724 (percent identity: 67 %/query alignment coverage: 97.7 %/subject alignment coverage: 99.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 84.
  
  
 0.552
XF_0453
Integral membrane proteinase; HflC and HflK could regulate a protease.
  
    0.528
XF_2301
Polysaccharide export protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 
 0.502
msbA
ABC transporter ATP-binding protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
   
   0.483
XF_2300
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.479
XF_2394
Glutaredoxin-like protein; Similar to GI|3650389 (percent identity: 54 %/query alignment coverage: 26.2 %/subject alignment coverage: 29.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.467
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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