STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_2364GumH protein; Similar to GI|2120730 (percent identity: 64 %/query alignment coverage: 100.0 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -48. (380 aa)    
Predicted Functional Partners:
XF_2360
GumM protein; Similar to GI|2120735 (percent identity: 69 %/query alignment coverage: 87.2 %/subject alignment coverage: 87.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the glycosyltransferase 26 family.
 
 0.858
XF_2362
GumJ protein; Similar to GI|2120732 (percent identity: 65 %/query alignment coverage: 93.1 %/subject alignment coverage: 95.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.801
XF_0608
Mannosyltransferase; Similar to GI|2125945 (percent identity: 38 %/query alignment coverage: 95.9 %/subject alignment coverage: 99.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
   
 0.787
XF_0887
Mannosyltransferase; Similar to GI|2125945 (percent identity: 31 %/query alignment coverage: 95.8 %/subject alignment coverage: 101.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
   
 0.710
XF_2370
GumB protein; Similar to GI|2120724 (percent identity: 67 %/query alignment coverage: 97.7 %/subject alignment coverage: 99.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 84.
 
  
 0.697
XF_2367
GumD protein; Similar to GI|2120726 (percent identity: 73 %/query alignment coverage: 100.0 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.613
XF_1846
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
    
   0.604
XF_2708
Endo-1,4-beta-glucanase; Similar to SP|P17974 (percent identity: 47 %/query alignment coverage: 88.8 %/subject alignment coverage: 74.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.597
XF_2369
GumC protein; Similar to GI|2120725 (percent identity: 62 %/query alignment coverage: 94.4 %/subject alignment coverage: 98.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.581
XF_1774
DNA methyltransferase; This gene contains a type II Intron (from 1691283 to 1693687); similar to SP|P15446; identified by sequence similarity (DNA methyltransferase); putative; ORF located manually; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
  
     0.549
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.