STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_2370GumB protein; Similar to GI|2120724 (percent identity: 67 %/query alignment coverage: 97.7 %/subject alignment coverage: 99.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 84. (217 aa)    
Predicted Functional Partners:
XF_2369
GumC protein; Similar to GI|2120725 (percent identity: 62 %/query alignment coverage: 94.4 %/subject alignment coverage: 98.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.993
XF_2367
GumD protein; Similar to GI|2120726 (percent identity: 73 %/query alignment coverage: 100.0 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.991
XF_2301
Polysaccharide export protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 
 0.800
XF_2568
ABC transporter ATP-binding protein; Similar to SP|Q56903 (percent identity: 45 %/query alignment coverage: 93.9 %/subject alignment coverage: 96.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.788
XF_2567
ABC transporter permease protein; Similar to SP|Q56902 (percent identity: 35 %/query alignment coverage: 97.4 %/subject alignment coverage: 100.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -21.
  
  
 0.784
XF_0607
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.741
XF_0259
Phosphomannose isomerase-GDP-mannose pyrophosphorylase; Similar to SP|P29956 (percent identity: 84 %/query alignment coverage: 96.9 %/subject alignment coverage: 100.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.738
XF_2362
GumJ protein; Similar to GI|2120732 (percent identity: 65 %/query alignment coverage: 93.1 %/subject alignment coverage: 95.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.737
XF_2364
GumH protein; Similar to GI|2120730 (percent identity: 64 %/query alignment coverage: 100.0 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -48.
 
  
 0.704
XF_0885
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.692
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.