STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_2385Acriflavin resistance protein D; Similar to SP|P76398 (percent identity: 50 %/query alignment coverage: 98.9 %/subject alignment coverage: 102.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -117; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1077 aa)    
Predicted Functional Partners:
XF_2384
Membrane fusion protein precursor; Similar to GI|1736780 (percent identity: 37 %/query alignment coverage: 94.6 %/subject alignment coverage: 85.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   0.947
XF_2093
Precursor of drug resistance protein; Similar to SP|P31223 (percent identity: 42 %/query alignment coverage: 90.4 %/subject alignment coverage: 92.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.756
XF_0244
Membrane fusion protein; Similar to GI|1399757 (percent identity: 25 %/query alignment coverage: 100.0 %/subject alignment coverage: 95.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.599
XF_2084
Component of multidrug efflux system; Similar to GI|1707644 (percent identity: 28 %/query alignment coverage: 97.3 %/subject alignment coverage: 86.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 72; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.590
XF_2386
Acriflavin resistance protein; Similar to SP|P76398 (percent identity: 42 %/query alignment coverage: 98.5 %/subject alignment coverage: 97.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
    
0.582
XF_2586
Outer membrane export factor; Similar to SP|P02930 (percent identity: 33 %/query alignment coverage: 98.0 %/subject alignment coverage: 89.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.579
queF
Conserved hypothetical protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
       0.413
XF_0302
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
   0.405
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.