STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XF_2397Toxin secretion ABC transporter ATP-binding protein; Similar to SP|P10089 (percent identity: 61 %/query alignment coverage: 96.9 %/subject alignment coverage: 98.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 21. (720 aa)    
Predicted Functional Partners:
XF_2398
Hemolysin secretion protein D; Similar to SP|P06739 (percent identity: 39 %/query alignment coverage: 101.1 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.985
XF_1216
Colicin V secretion protein; Similar to SP|P22519 (percent identity: 25 %/query alignment coverage: 97.1 %/subject alignment coverage: 98.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.928
XF_2407
Bacteriocin; Similar to GI|2961326 (percent identity: 27 %/query alignment coverage: 56.7 %/subject alignment coverage: 122.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.888
XF_2759
Hemolysin-type calcium binding protein; Similar to SP|P55127 (percent identity: 35 %/query alignment coverage: 94.0 %/subject alignment coverage: 66.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.839
XF_1011
Hemolysin-type calcium binding protein; Similar to SP|P55127 (percent identity: 30 %/query alignment coverage: 78.2 %/subject alignment coverage: 69.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.838
XF_0668
Hemolysin-type calcium binding protein; Similar to SP|P55127 (percent identity: 32 %/query alignment coverage: 86.8 %/subject alignment coverage: 57.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.828
XF_2399
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.615
msbA
ABC transporter ATP-binding protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
 
  
0.592
XF_0301
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.572
XF_0300
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.565
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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