STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_2432UTP-glucose-1-phosphate uridylyltransferase; Similar to GI|2117938 (percent identity: 82 %/query alignment coverage: 99.3 %/subject alignment coverage: 90.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (296 aa)    
Predicted Functional Partners:
XF_1606
UDP-glucose dehydrogenase; Similar to GI|1084047 (percent identity: 63 %/query alignment coverage: 102.4 %/subject alignment coverage: 103.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 0.964
XF_0256
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
 
 
0.924
XF_0260
Phosphoglucomutase/phosphomannomutase; Similar to SP|P29955 (percent identity: 84 %/query alignment coverage: 89.6 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
 0.922
lapB
Conserved hypothetical protein; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family.
       0.844
XF_2433
Epimerase/dehydratase protein; Similar to SP|P39853 (percent identity: 37 %/query alignment coverage: 88.5 %/subject alignment coverage: 93.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.822
XF_2434
Lipopolysaccharide core biosynthesis protein; Similar to GI|836904 (percent identity: 37 %/query alignment coverage: 96.9 %/subject alignment coverage: 104.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
 
 0.819
XF_2279
Nucleotide sugar epimerase; Similar to GI|5739472 (percent identity: 51 %/query alignment coverage: 97.7 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
    
 0.810
XF_2436
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.785
XF_0151
Phosphomannomutase; Similar to SP|P26276 (percent identity: 45 %/query alignment coverage: 96.8 %/subject alignment coverage: 97.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 1017.
   
 0.782
ihfB
Integration host factor, beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
       0.732
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.