STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_2445Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (1056 aa)    
Predicted Functional Partners:
XF_2448
ABC transporter sugar-binding protein; Similar to GI|2828820 (percent identity: 24 %/query alignment coverage: 92.1 %/subject alignment coverage: 88.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.925
XF_2449
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.891
XF_2447
ABC transporter sugar permease; Similar to SP|P29823 (percent identity: 37 %/query alignment coverage: 98.3 %/subject alignment coverage: 96.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.864
XF_2446
ABC transporter sugar permease; Similar to GI|6137042 (percent identity: 40 %/query alignment coverage: 96.8 %/subject alignment coverage: 90.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.860
XF_2554
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.725
XF_1214
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 267.
  
     0.720
XF_2675
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.714
XF_1522
General secretory pathway protein J precursor; Similar to SP|P31740 (percent identity: 56 %/query alignment coverage: 98.1 %/subject alignment coverage: 96.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.705
XF_0214
Conserved hypothetical protein; Similar to GI|987638 (percent identity: 27 %/query alignment coverage: 87.9 %/subject alignment coverage: 103.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.636
XF_0196
Conserved hypothetical protein; Similar to GI|5139534 (percent identity: 22 %/query alignment coverage: 92.5 %/subject alignment coverage: 93.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
     0.632
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.