STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_2500Phage-related terminase large subunit; Similar to SP|P36693 (percent identity: 28 %/query alignment coverage: 95.2 %/subject alignment coverage: 86.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 210. (580 aa)    
Predicted Functional Partners:
XF_2498
Phage-related portal protein; Similar to SP|P36272 (percent identity: 25 %/query alignment coverage: 96.6 %/subject alignment coverage: 97.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.949
XF_2497
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.944
XF_2492
Phage-related baseplate assembly protein; Similar to SP|P31340 (percent identity: 32 %/query alignment coverage: 105.1 %/subject alignment coverage: 97.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.918
XF_2493
Conserved hypothetical protein; Similar to GI|5725154 (percent identity: 30 %/query alignment coverage: 93.3 %/subject alignment coverage: 98.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.793
XF_0510
Conserved hypothetical protein; Similar to GI|6723246 (percent identity: 25 %/query alignment coverage: 88.5 %/subject alignment coverage: 97.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.784
XF_0713
Phage-related portal protein; Similar to SP|P36272 (percent identity: 25 %/query alignment coverage: 96.6 %/subject alignment coverage: 97.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.784
XF_0724
Phage-related baseplate assembly protein; Similar to SP|P51767 (percent identity: 46 %/query alignment coverage: 101.0 %/subject alignment coverage: 99.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.778
XF_2488
Phage-related baseplate assembly protein; Similar to SP|P51767 (percent identity: 46 %/query alignment coverage: 101.0 %/subject alignment coverage: 99.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.778
XF_2499
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.774
XF_0727
Phage-related contractile tail sheath protein; Similar to GI|2144176 (percent identity: 46 %/query alignment coverage: 98.2 %/subject alignment coverage: 100.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
    0.771
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.