STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_2535Two-component system, sensor protein; Similar to GI|1729784 (percent identity: 34 %/query alignment coverage: 83.9 %/subject alignment coverage: 73.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 216. (373 aa)    
Predicted Functional Partners:
XF_2534
Two-component system, regulatory protein; Similar to GI|1729783 (percent identity: 59 %/query alignment coverage: 97.8 %/subject alignment coverage: 96.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.964
XF_0868
Dihydrolipoamide dehydrogenase; Similar to GI|1073212 (percent identity: 57 %/query alignment coverage: 100.2 %/subject alignment coverage: 101.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
 0.943
XF_2336
Two-component system, regulatory protein; Similar to GI|1729783 (percent identity: 51 %/query alignment coverage: 90.9 %/subject alignment coverage: 96.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.927
XF_0450
Two-component system, regulatory protein; Similar to SP|P43501 (percent identity: 50 %/query alignment coverage: 90.9 %/subject alignment coverage: 99.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -12.
 
 
 0.843
XF_0389
Two-component system, regulatory protein; Similar to GI|2120818 (percent identity: 54 %/query alignment coverage: 100.0 %/subject alignment coverage: 101.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.833
XF_0322
Two-component system, regulatory protein; Similar to SP|P22104 (percent identity: 45 %/query alignment coverage: 94.8 %/subject alignment coverage: 97.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -57.
 
 
 0.826
XF_2593
Two-component system, regulatory protein; Similar to SP|P08402 (percent identity: 56 %/query alignment coverage: 84.2 %/subject alignment coverage: 97.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 57.
 
 
 0.820
XF_0401
Conserved hypothetical protein; Similar to SP|P45365 (percent identity: 26 %/query alignment coverage: 99.8 %/subject alignment coverage: 81.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.810
XF_2359
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
 
 0.773
XF_1955
Pilus protein; Similar to SP|P46384 (percent identity: 82 %/query alignment coverage: 82.1 %/subject alignment coverage: 88.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.761
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.