STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_2537Pre-pilin leader peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (287 aa)    
Predicted Functional Partners:
XF_2538
Fimbrial assembly protein; Similar to SP|P22609 (percent identity: 56 %/query alignment coverage: 81.4 %/subject alignment coverage: 98.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.975
coaE
Conserved hypothetical protein; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
 
    0.911
XF_2544
Pilus biogenesis protein; Similar to SP|P22608 (percent identity: 55 %/query alignment coverage: 98.4 %/subject alignment coverage: 100.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 
 0.895
XF_1633
Twitching motility protein; Similar to SP|P24559 (percent identity: 74 %/query alignment coverage: 100.0 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
   
 0.846
XF_1518
General secretory pathway protein F; Similar to GI|155381 (percent identity: 66 %/query alignment coverage: 96.5 %/subject alignment coverage: 100.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.839
XF_1517
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.836
XF_1632
Twitching motility protein; Similar to GI|2120641 (percent identity: 60 %/query alignment coverage: 98.1 %/subject alignment coverage: 96.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
   
 0.814
XF_0924
DNA processing chain A; Similar to SP|P43862 (percent identity: 37 %/query alignment coverage: 87.6 %/subject alignment coverage: 90.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.706
XF_1078
DNA uptake protein; Similar to SP|P51973 (percent identity: 35 %/query alignment coverage: 74.9 %/subject alignment coverage: 90.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.698
XF_0593
Conserved hypothetical protein; Similar to SP|Q57134 (percent identity: 49 %/query alignment coverage: 57.8 %/subject alignment coverage: 56.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
   
  
 0.670
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.