STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_2567ABC transporter permease protein; Similar to SP|Q56902 (percent identity: 35 %/query alignment coverage: 97.4 %/subject alignment coverage: 100.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -21. (267 aa)    
Predicted Functional Partners:
XF_2568
ABC transporter ATP-binding protein; Similar to SP|Q56903 (percent identity: 45 %/query alignment coverage: 93.9 %/subject alignment coverage: 96.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 0.999
XF_2370
GumB protein; Similar to GI|2120724 (percent identity: 67 %/query alignment coverage: 97.7 %/subject alignment coverage: 99.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 84.
  
  
 0.784
XF_1637
Glycosyl transferase; Similar to GI|1314565 (percent identity: 29 %/query alignment coverage: 77.2 %/subject alignment coverage: 72.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.670
XF_0259
Phosphomannose isomerase-GDP-mannose pyrophosphorylase; Similar to SP|P29956 (percent identity: 84 %/query alignment coverage: 96.9 %/subject alignment coverage: 100.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.623
XF_2566
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 21.
       0.547
XF_2367
GumD protein; Similar to GI|2120726 (percent identity: 73 %/query alignment coverage: 100.0 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
     
 0.475
XF_1222
Conserved hypothetical protein; Similar to SP|P36880 (percent identity: 54 %/query alignment coverage: 93.8 %/subject alignment coverage: 94.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
    
  0.411
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.