STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_2574Conserved hypothetical protein; Similar to GI|6459110 (percent identity: 38 %/query alignment coverage: 89.4 %/subject alignment coverage: 78.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (227 aa)    
Predicted Functional Partners:
ispG
Conserved hypothetical protein; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
       0.801
XF_2576
Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.642
XF_0432
BrkB protein; Similar to GI|6460437 (percent identity: 33 %/query alignment coverage: 95.9 %/subject alignment coverage: 61.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.554
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.544
XF_0287
Regulator of pathogenicity factors; Similar to GI|1922920 (percent identity: 72 %/query alignment coverage: 98.4 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
    
  0.533
XF_2276
Peptide synthase; Similar to GI|2808752 (percent identity: 26 %/query alignment coverage: 100.0 %/subject alignment coverage: 105.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
    
  0.533
cyp133B2
Cytochrome P-450 hydroxylase; Similar to GI|4753860 (percent identity: 37 %/query alignment coverage: 93.0 %/subject alignment coverage: 90.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
    
  0.525
cyp133B1
Cytochrome P450-like enzyme; Similar to SP|P53554 (percent identity: 37 %/query alignment coverage: 94.3 %/subject alignment coverage: 95.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -108.
    
  0.525
XF_2577
Two-component system, sensor protein; Similar to GI|703269 (percent identity: 25 %/query alignment coverage: 104.2 %/subject alignment coverage: 97.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
    0.484
XF_2578
Two-component system, regulatory protein; Similar to GI|5524743 (percent identity: 40 %/query alignment coverage: 89.6 %/subject alignment coverage: 88.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.482
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.