STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_2604Pterin-4-alpha-carbinolamine dehydratase; Similar to SP|P43335 (percent identity: 34 %/query alignment coverage: 92.2 %/subject alignment coverage: 90.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (116 aa)    
Predicted Functional Partners:
XF_2605
TonB protein; Similar to SP|O34261 (percent identity: 36 %/query alignment coverage: 69.3 %/subject alignment coverage: 42.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.773
nfuA
Conserved hypothetical protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
  
    0.580
XF_0036
Aromatic-amino-acid aminotranferase; Similar to GI|5565921 (percent identity: 55 %/query alignment coverage: 99.5 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
  
  
 0.523
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.